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pipeline:window:cryolo [2019/04/16 11:05] twagner [Configuration] |
pipeline:window:cryolo [2019/07/09 21:00] twagner [Data preparation] |
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==== Data preparation ==== | ==== Data preparation ==== | ||
CrYOLO supports MRC, TIF and JPG files. It can work with 32 bit data, 8 bit data and 16 bit data. | CrYOLO supports MRC, TIF and JPG files. It can work with 32 bit data, 8 bit data and 16 bit data. | ||
- | It will work on original MRC files, but it will probably improve when the data are filtered. Therefore you should low-pass filter them to a reasonable level. Since Version 1.2 crYOLO can automatically do that for you. You just have to add | + | It will work on original MRC files, but it will probably improve when the data are denoised. Therefore you should low-pass filter them to a reasonable level. Since Version 1.2 crYOLO can automatically do that for you. You just have to add |
< | < | ||
" | " | ||
</ | </ | ||
+ | |||
to the model section in your config file to filter your images down to an absolute frequency of 0.1. The filtered images are saved in folder '' | to the model section in your config file to filter your images down to an absolute frequency of 0.1. The filtered images are saved in folder '' | ||
+ | <hidden Alternative: | ||
+ | < | ||
+ | " | ||
+ | </ | ||
+ | </ | ||
+ | < | ||
If you followed the installation instructions, | If you followed the installation instructions, | ||
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===== Picking particles - Without training using a general model ===== | ===== Picking particles - Without training using a general model ===== | ||
+ | Here you can find how to apply the general models we trained for you. If you would like to train your own general model, please see our extra wiki page: [[: | ||
- | The general models can be found and downloaded here: [[howto: | + | Our general models can be found and downloaded here: [[howto: |
==== Configuration==== | ==== Configuration==== | ||
The next step is to create a configuration file. Type: | The next step is to create a configuration file. Type: | ||
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==== Training ==== | ==== Training ==== | ||
- | In comparision to the training from scratch, you can skip the warm up training. Moreover you have to add the // | + | In comparision to the training from scratch, you can skip the warm up training. Moreover you have to add the //%%--%%fine_tune// flag: |
< | < | ||
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* // | * // | ||
* // | * // | ||
+ | * //-sr SEARCH_RANGE_FACTOR//: | ||
===== Help ===== | ===== Help ===== |