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--- pipeline:window:cryolo [2019/03/17 12:37]
twagner [Advanced parameters]
+++ pipeline:window:cryolo [2019/03/17 20:00]
twagner [Training on CPU]
@@ Line 15: / Line 15: @@
 You can find more technical details in our paper:
-[[https://www.biorxiv.org/content/10.1101/356584v1|SPHIRE-crYOLO: A fast and well-centering automated particle picker for cryo-EM]]
+[[https://www.biorxiv.org/content/10.1101/356584v2|SPHIRE-crYOLO: A fast and accurate fully automated particle picker for cryo-EM
+]]
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@@ Line 183: / Line 184: @@
 [{{ :pipeline:window:ezgif-1-3b966b0324d1.gif?400 |This example shows how to filter particle boxes using the cryolo boxmanager. It is an animated gif. Click on it to see it playing.}}]
-Right now, this filtering does not work for filaments.
+Right now, **this filtering does not yet work for filaments**.
@@ Line 275: / Line 276: @@
 Picking is identical as with a model trained from scratch, so we will skip it here. Just follow the description given [[pipeline:window:cryolo#Picking|above]]
+==== Training on CPU ====
+The fine tune mode is especially useful if you want to [[downloads:cryolo_1#run_it_on_the_cpu|train crYOLO on the CPU]]. On my local machine it reduced the time from 12-15 hours to 4-5 hours.
 ===== Picking filaments - Using a model trained for your data =====
 Since version 1.1.0 crYOLO supports picking filaments.