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Both sides previous revision Previous revision Next revision | Previous revision Next revision Both sides next revision | ||
pipeline:window:cryolo:picking_general_refine [2019/09/18 12:53] twagner [Picking particles - Using the general model refined for your data] |
pipeline:window:cryolo:picking_general_refine [2019/09/19 15:49] twagner [4. Training] |
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</ | </ | ||
- | <hidden **Create the configuration file using the command line:**> | + | <html> |
+ | <div style=" | ||
+ | < | ||
+ | </ | ||
+ | </ | ||
+ | <hidden> | ||
I assume your box files for training are in the folder '' | I assume your box files for training are in the folder '' | ||
< | < | ||
- | cryoloo.py config config_cryolo.json 160 --train_image_folder train_image --train_annot_folder train_annot --pretrained_weights gmodel_phosnet_20190516.h5 | + | cryolo_gui.py config config_cryolo.json 160 --train_image_folder train_image --train_annot_folder train_annot --pretrained_weights gmodel_phosnet_20190516.h5 |
</ | </ | ||
To get a full description of all available options type: | To get a full description of all available options type: | ||
< | < | ||
- | cryoloo.py config -h | + | cryolo_gui.py config -h |
</ | </ | ||
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< | < | ||
- | cryoloo.py config config_cryolo.json 160 --train_image_folder train_image --train_annot_folder train_annot --pretrained_weights gmodel_phosnet_20190516.h5 --valid_image_folder valid_img --valid_annot_folder valid_annot | + | cryolo_gui.py config config_cryolo.json 160 --train_image_folder train_image --train_annot_folder train_annot --pretrained_weights gmodel_phosnet_20190516.h5 --valid_image_folder valid_img --valid_annot_folder valid_annot |
</ | </ | ||
</ | </ | ||
+ | < | ||
+ | <div style=" | ||
+ | <b> </ | ||
+ | </ | ||
+ | </ | ||
==== 4. Training ==== | ==== 4. Training ==== | ||
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</ | </ | ||
- | + | < | |
- | <hidden **Alternative: | + | <div style=" |
+ | <b>Alternative: | ||
+ | </ | ||
+ | </ | ||
+ | <hidden> | ||
In comparison to the training from scratch, you can skip the warm up training ( -w 0 ). Moreover you have to add the // | In comparison to the training from scratch, you can skip the warm up training ( -w 0 ). Moreover you have to add the // | ||
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</ | </ | ||
</ | </ | ||
+ | < | ||
+ | <div style=" | ||
+ | <b> </ | ||
+ | </ | ||
+ | </ | ||
==== 5. Picking ==== | ==== 5. Picking ==== | ||
{{page> | {{page> |