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pipeline:window:cryolo:picking_general [2019/09/18 08:38] twagner [2. Configuration] |
pipeline:window:cryolo:picking_general [2019/10/11 17:11] twagner [2. Configuration] |
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* General model trained for low-pass filtered images : Select //filter// " | * General model trained for low-pass filtered images : Select //filter// " | ||
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* General model trained for JANNI-denoised images: Select //filter// " | * General model trained for JANNI-denoised images: Select //filter// " | ||
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* General model for negative stain images: Select filter " | * General model for negative stain images: Select filter " | ||
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In the following I assume that you target box size is 220. Please adapt if necessary. | In the following I assume that you target box size is 220. Please adapt if necessary. | ||
For the general **[[: | For the general **[[: | ||
< | < | ||
- | cryoloo.py config config_cryolo_.json 220 --filter LOWPASS --low_pass_cutoff 0.1 | + | cryolo_gui.py config config_cryolo_.json 220 --filter LOWPASS --low_pass_cutoff 0.1 |
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For the general model trained with **neural-network denoised cryo images** (with [[: | For the general model trained with **neural-network denoised cryo images** (with [[: | ||
< | < | ||
- | cryoloo.py config config_cryolo_.json 220 --filter JANNI --janni_model / | + | cryolo_gui.py config config_cryolo_.json 220 --filter JANNI --janni_model / |
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For the general model for **negative stain data** please run: | For the general model for **negative stain data** please run: | ||
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- | cryoloo.py config config_cryolo_.json 220 --filter NONE | + | cryolo_gui.py config config_cryolo_.json 220 --filter NONE |
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</ | </ | ||
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+ | <b> </ | ||
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==== 3. Picking ==== | ==== 3. Picking ==== | ||
{{page> | {{page> |