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pipeline:window:cryolo:picking_general [2019/09/17 15:39]
twagner [2. Configuration]
pipeline:window:cryolo:picking_general [2019/09/19 08:11]
twagner [2. Configuration]
Line 25: Line 25:
 <html> <html>
 <div style="background-color: #cfc ; padding: 10px; border: 1px solid green;">  <div style="background-color: #cfc ; padding: 10px; border: 1px solid green;"> 
-<b>Press the Start button to write the configuration file to disk.  </b>+<b>&#9658; Press the [Startbutton to write the configuration file to disk.  </b>
 </div> </div>
 </html> </html>
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 For the general **[[:cryolo_nets#network_3_phosaurusnet|Phosaurus network]]** trained for **low-pass filtered cryo images** run: For the general **[[:cryolo_nets#network_3_phosaurusnet|Phosaurus network]]** trained for **low-pass filtered cryo images** run:
 <code> <code>
-cryoloo.py config config_cryolo_.json 220 --filter LOWPASS --low_pass_cutoff 0.1+cryolo_gui.py config config_cryolo_.json 220 --filter LOWPASS --low_pass_cutoff 0.1
 </code> </code>
  
 For the general model trained with **neural-network denoised cryo images** (with [[:janni_tutorial#download|JANNI's general model]]) run: For the general model trained with **neural-network denoised cryo images** (with [[:janni_tutorial#download|JANNI's general model]]) run:
 <code> <code>
-cryoloo.py config config_cryolo_.json 220 --filter JANNI --janni_model /path/to/janni_general_model.h5+cryolo_gui.py config config_cryolo_.json 220 --filter JANNI --janni_model /path/to/janni_general_model.h5
 </code> </code>
  
 For the general model for **negative stain data** please run: For the general model for **negative stain data** please run:
 <code> <code>
-cryoloo.py config config_cryolo_.json 220 --filter NONE+cryolo_gui.py config config_cryolo_.json 220 --filter NONE
 </code> </code>
 </hidden> </hidden>
pipeline/window/cryolo/picking_general.txt ยท Last modified: 2020/06/05 09:03 by twagner