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pipeline:window:cryolo:picking [2019/09/17 15:04] twagner |
pipeline:window:cryolo:picking [2019/09/18 12:45] twagner |
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+ | **Adjusting confidence threshold** | ||
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In crYOLO, all particles have an assigned confidence value. By default, all particles with a confidence value below 0.3 are discarded. If you want to pick less or more conservatively you might want to change this confidence threshold to a less (e.g. 0.2) or more (e.g. 0.4) conservative value in the //" | In crYOLO, all particles have an assigned confidence value. By default, all particles with a confidence value below 0.3 are discarded. If you want to pick less or more conservatively you might want to change this confidence threshold to a less (e.g. 0.2) or more (e.g. 0.4) conservative value in the //" | ||
However, it is much easier to select the best threshold after picking using the '' | However, it is much easier to select the best threshold after picking using the '' | ||
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<div style=" | <div style=" | ||
- | < | + | <b>&# |
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<hidden **Alternative: | <hidden **Alternative: | ||
- | To pick all your images in the directory '' | + | To pick all your images in the directory '' |
< | < | ||
cryolo_predict.py -c config.json -w cryolo_model.h5 -i full_data/ -g 0 -o boxfiles/ -t 0.3 | cryolo_predict.py -c config.json -w cryolo_model.h5 -i full_data/ -g 0 -o boxfiles/ -t 0.3 |