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pipeline:window:cryolo:picking

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pipeline:window:cryolo:picking [2019/09/17 15:03]
twagner
pipeline:window:cryolo:picking [2019/09/17 15:25]
twagner
Line 9: Line 9:
 <html> <html>
 <div style="background-color: #cfc ; padding: 10px; border: 1px solid green;">  <div style="background-color: #cfc ; padding: 10px; border: 1px solid green;"> 
-<b>Press the the Start button to run the prediction.  </b>+<b>&#9658; Press the the [Startbutton to run the prediction.  </b>
 </div> </div>
 </html> </html>
Line 16: Line 16:
 You will find the picked particles in your specified output directory. You will find the picked particles in your specified output directory.
  
-<hidden **Run prediction from the command line**+<hidden **Alternative:** Run prediction from the command line> 
-To pick all your images in the directory ''full_data'' with the  model weights file ''cryolo_model.h5'' (//e.g. or ''gmodel_phosnet_X_Y.h5'' when using the general model//) and and a confidence threshold of 0.3 run:: +To pick all your images in the directory ''full_data'' with the  model weight file ''cryolo_model.h5'' (//e.g. or ''gmodel_phosnet_X_Y.h5'' when using the general model//) and and a confidence threshold of 0.3 run:: 
 <code> <code>
 cryolo_predict.py -c config.json -w cryolo_model.h5 -i full_data/ -g 0 -o boxfiles/ -t 0.3 cryolo_predict.py -c config.json -w cryolo_model.h5 -i full_data/ -g 0 -o boxfiles/ -t 0.3
pipeline/window/cryolo/picking.txt · Last modified: 2020/05/17 11:04 by twagner