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pipeline:window:cryolo:picking [2019/09/17 09:53] twagner |
pipeline:window:cryolo:picking [2019/09/18 12:45] twagner |
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- | Select the action | + | Select the action |
{{ : | {{ : | ||
<note tip> | <note tip> | ||
- | In crYOLO, all particles have a assigned confidence value. By default, all particle | + | **Adjusting confidence threshold** |
+ | |||
+ | In crYOLO, all particles have an assigned confidence value. By default, all particles | ||
However, it is much easier to select the best threshold after picking using the '' | However, it is much easier to select the best threshold after picking using the '' | ||
</ | </ | ||
- | Press the the Start button to run the prediction. You will find the picked particles in your specified output directory. | + | < |
+ | <div style=" | ||
+ | < | ||
+ | </ | ||
+ | </ | ||
+ | |||
+ | |||
+ | You will find the picked particles in your specified output directory. | ||
- | <hidden **Run prediction from the command line**> | + | < |
- | To pick all your images in the directory '' | + | To pick all your images in the directory '' |
< | < | ||
cryolo_predict.py -c config.json -w cryolo_model.h5 -i full_data/ -g 0 -o boxfiles/ -t 0.3 | cryolo_predict.py -c config.json -w cryolo_model.h5 -i full_data/ -g 0 -o boxfiles/ -t 0.3 |