This shows you the differences between two versions of the page.
Both sides previous revision Previous revision Next revision | Previous revision Next revision Both sides next revision | ||
pipeline:window:cryolo:picking [2019/09/17 08:19] twagner |
pipeline:window:cryolo:picking [2019/10/11 17:11] twagner |
||
---|---|---|---|
Line 1: | Line 1: | ||
- | Select the action | + | Select the action |
{{ : | {{ : | ||
<note tip> | <note tip> | ||
- | In crYOLO, all particles have a assigned confidence value. By default, all particle | + | **Adjusting confidence threshold** |
+ | |||
+ | In crYOLO, all particles have an assigned confidence value. By default, all particles | ||
However, it is much easier to select the best threshold after picking using the '' | However, it is much easier to select the best threshold after picking using the '' | ||
</ | </ | ||
- | Press the the Start button to run the prediction. | + | You will find the picked particles in your specified output directory. |
- | <hidden **Run prediction from the command line**> | + | <html> |
- | You can now use the model weights | + | <div style=" |
+ | < | ||
+ | </ | ||
+ | </ | ||
+ | |||
+ | |||
+ | < | ||
+ | <div style=" | ||
+ | < | ||
+ | </ | ||
+ | </ | ||
+ | < | ||
+ | To pick all your images in the directory '' | ||
< | < | ||
- | cryolo_predict.py -c config.json -w cryolo_model.h5 -i full_data/ -g 0 -o boxfiles/ | + | cryolo_predict.py -c config.json -w cryolo_model.h5 -i full_data/ -g 0 -o boxfiles/ |
</ | </ | ||
You will find the picked particles in the directory '' | You will find the picked particles in the directory '' | ||
- | + | </hidden initialState=" | |
- | + | < | |
- | </hidden> | + | <div style=" |
+ | < | ||
+ | </ | ||
+ | </html> |