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pipeline:window:cryolo:picking [2019/09/16 16:59] twagner |
pipeline:window:cryolo:picking [2019/09/17 15:25] twagner |
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+ | Select the action " | ||
{{ : | {{ : | ||
- | You can now use the model weights file (//e.g. '' | + | <note tip> |
- | < | + | In crYOLO, all particles have an assigned confidence value. By default, all particles with a confidence value below 0.3 are discarded. If you want to pick less or more conservatively you might want to change this confidence threshold to a less (e.g. 0.2) or more (e.g. 0.4) conservative value in the //" |
- | cryolo_predict.py -c config.json -w cryolo_model.h5 -i full_data/ -g 0 -o boxfiles/ | + | However, it is much easier |
- | </code> | + | </note> |
- | You will find the picked particles in the directory '' | + | < |
+ | <div style=" | ||
+ | < | ||
+ | </ | ||
+ | </ | ||
- | If you want to pick less conservatively or more conservatively you might want to change | + | |
+ | You will find the picked particles in your specified output directory. | ||
+ | |||
+ | <hidden **Alternative: | ||
+ | To pick all your images in the directory '' | ||
< | < | ||
- | cryolo_predict.py -c config.json -w cryolo_model.h5 -i full_data/ -g 0 -o boxfiles/ -t 0.2 | + | cryolo_predict.py -c config.json -w cryolo_model.h5 -i full_data/ -g 0 -o boxfiles/ -t 0.3 |
</ | </ | ||
- | However, it is much easier to select | + | |
+ | You will find the picked particles in the directory | ||
+ | </ |