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pipeline:window:cryolo:picking [2019/09/14 10:12] twagner created |
pipeline:window:cryolo:picking [2019/09/16 16:48] twagner |
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- | You can now use the model weights | + | You can now use the model weights |
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- | cryolo_predict.py -c config.json -w model.h5 -i full_data/ -g 0 -o boxfiles/ | + | cryolo_predict.py -c config.json -w cryolo_model.h5 -i full_data/ -g 0 -o boxfiles/ |
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If you want to pick less conservatively or more conservatively you might want to change the selection threshold from the default of 0.3 to a less conservative value like 0.2 or more conservative value like 0.4 using the //-t// parameter: | If you want to pick less conservatively or more conservatively you might want to change the selection threshold from the default of 0.3 to a less conservative value like 0.2 or more conservative value like 0.4 using the //-t// parameter: | ||
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- | cryolo_predict.py -c config.json -w model.h5 -i full_data/ -g 0 -o boxfiles/ -t 0.2 | + | cryolo_predict.py -c config.json -w cryolo_model.h5 -i full_data/ -g 0 -o boxfiles/ -t 0.2 |
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However, it is much easier to select the best threshold after picking using the '' | However, it is much easier to select the best threshold after picking using the '' |