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pipeline:viper:sxviper [2018/08/22 11:46] fmerino |
pipeline:viper:sxviper [2019/04/02 10:52] (current) lusnig [See also] |
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~~NOTOC~~ | ~~NOTOC~~ | ||
- | ===== sxviper | + | ===== sp_viper |
Initial 3D Model - VIPER: //ab initio// 3D structure determination using Validation of Individual Parameter Reproducibility (VIPER). Determines a validated initial model using a small set of class averages produced by [[pipeline: | Initial 3D Model - VIPER: //ab initio// 3D structure determination using Validation of Individual Parameter Reproducibility (VIPER). Determines a validated initial model using a small set of class averages produced by [[pipeline: | ||
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Usage in command line | Usage in command line | ||
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===== Typical usage ===== | ===== Typical usage ===== | ||
- | sxrviper | + | sp_rviper |
- | mpirun --npernode 16 -np 24 --host node1, | + | mpirun --npernode 16 -np 24 --host node1, |
A faster version using restricted ranges of parameters. | A faster version using restricted ranges of parameters. | ||
- | mpirun --npernode 16 -np 16 --host node1 sxviper.py stack output_directory --fl=0.25 --radius=30 --xr=1 --nruns=2 | + | mpirun --npernode 16 -np 16 --host node1 sp_viper.py stack output_directory --fl=0.25 --radius=30 --xr=1 --nruns=2 |
The VIPER program exists only in MPI version. | The VIPER program exists only in MPI version. | ||
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==== Files ==== | ==== Files ==== | ||
- | sparx/bin/sxviper.py | + | sparx/bin/sp_viper.py |
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==== See also ==== | ==== See also ==== | ||
- | [[pipeline: | + | [[pipeline: |
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