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pipeline:viper:sp_proj_compare [2019/04/02 11:57] lusnig created |
pipeline:viper:sp_proj_compare [2019/12/11 18:31] shaikh |
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sp_proj_compare.py stack input_volume outdir --mode=viper --classangles=angles_file --classselect=img_selection_file --prjmethod=interpolation_method --delta=angular_increment --matchshift=shift_range --matchrad=outer_radius --matchstep=ring_step --symmetry=optional_symmetry --partangles=refinement_params --partselect=substack_select --refineshift=shift_range --outliers=max_angle_diff --refinerad=outer_radius --refinestep=ring_step --align=2d_alignment_method --display --verbose | sp_proj_compare.py stack input_volume outdir --mode=viper --classangles=angles_file --classselect=img_selection_file --prjmethod=interpolation_method --delta=angular_increment --matchshift=shift_range --matchrad=outer_radius --matchstep=ring_step --symmetry=optional_symmetry --partangles=refinement_params --partselect=substack_select --refineshift=shift_range --outliers=max_angle_diff --refinerad=outer_radius --refinestep=ring_step --align=2d_alignment_method --display --verbose | ||
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=== Main Parameters === | === Main Parameters === | ||
; stack : Input images stack : Set of 2D images to be compared. (default required string) | ; stack : Input images stack : Set of 2D images to be compared. (default required string) | ||
- | ; input_volume : Input volume : Reconstruction for which re-projections will be computed. In RVIPER, this file is of the form main003/ | + | ; input_volume : Input volume : Reconstruction for which re-projections will be computed. In RVIPER, this file is of the form main003/ |
; outdir : Output directory : Directory where outputs will be written. (default required string) | ; outdir : Output directory : Directory where outputs will be written. (default required string) | ||
; %%--%%mode : Comparison method : Choices are: viper, projmatch, and meridien. (default viper) | ; %%--%%mode : Comparison method : Choices are: viper, projmatch, and meridien. (default viper) | ||
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==== Files ==== | ==== Files ==== | ||
- | sparx/ | + | sphire/ |
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==== Bugs ==== | ==== Bugs ==== | ||
- | There are no known bugs so far. | + | 2019/06/18 Strange behavior when the volume/ |
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