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pipeline:utilities:sxrelion2sphire

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pipeline:utilities:sxrelion2sphire [2018/07/10 22:28]
moriya 		pipeline:utilities:sxrelion2sphire [2018/07/10 22:34]
moriya
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 || *_micrographs.txt || Text file containing a list of micrograph names/paths (Micrograph selection file). It can be used as input of [[pipeline:cter:sxcter|sxcter]], [[pipeline:window:sxwindow|sxwindow]], [[pipeline:movie:sxunblur|sxunblur]], [[pipeline:movie:sxsummovie|sxsummovie]], and [[pipeline:utilities:sxpipe_organize_micrographs|sxpipe organize_micrographs]]. (requires Micrographs Category) || || *_micrographs.txt || Text file containing a list of micrograph names/paths (Micrograph selection file). It can be used as input of [[pipeline:cter:sxcter|sxcter]], [[pipeline:window:sxwindow|sxwindow]], [[pipeline:movie:sxunblur|sxunblur]], [[pipeline:movie:sxsummovie|sxsummovie]], and [[pipeline:utilities:sxpipe_organize_micrographs|sxpipe organize_micrographs]]. (requires Micrographs Category) ||
 || *_cter_partres.txt || Text file containing a list of CTF parameters in CTER format (CTER partres file). It can be used as an input of [[pipeline:cter:sxgui_cter|sxgui_cter]] and [[pipeline:window:sxwindow|sxwindow]]. (requires CTF Estimation Category) || || *_cter_partres.txt || Text file containing a list of CTF parameters in CTER format (CTER partres file). It can be used as an input of [[pipeline:cter:sxgui_cter|sxgui_cter]] and [[pipeline:window:sxwindow|sxwindow]]. (requires CTF Estimation Category) ||
-|| Coordinates/*.box || Coordinates files. One for each micrograph. Each file can be used as an input of [[pipeline:window:sxwindow|sxwindow]]. (requires Particle Extraction Category) || +|| Coordinates/*.box || Coordinates files. One for each micrograph. These files can be used as inputs of [[pipeline:window:sxwindow|sxwindow]]. (requires Particle Extraction Category) || 
-|| Rebox/*.rbx || SPHIRE rebox files. One for each micrograph. Each file can be used as an input of [[pipeline:window:sxrewindow|sxrewindow]]. (requires Particle Extraction Category) ||+|| Rebox/*.rbx || SPHIRE rebox files. One for each micrograph. These files can be used as inputs of [[pipeline:window:sxrewindow|sxrewindow]]. (requires Particle Extraction Category) ||
 || EMAN2DB/*_stack.bdb || Per-micrograph virtual stacks of particle images in BDB format (only when %%--%%create_stack option without %%--%%cs_save_as_hdf is used) containing the header entries associated with the extracted information. (requires Particle Extraction Category) || || EMAN2DB/*_stack.bdb || Per-micrograph virtual stacks of particle images in BDB format (only when %%--%%create_stack option without %%--%%cs_save_as_hdf is used) containing the header entries associated with the extracted information. (requires Particle Extraction Category) ||
 || *_stack.hdf || Stack of all particle images in HDF format (only when %%--%%create_stack option with %%--%%cs_save_as_hdf is used) containing the header entries associated with the extracted information. (requires Particle Extraction Category) || || *_stack.hdf || Stack of all particle images in HDF format (only when %%--%%create_stack option with %%--%%cs_save_as_hdf is used) containing the header entries associated with the extracted information. (requires Particle Extraction Category) ||
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 ==== See also ==== ==== See also ====
-[[pipeline:cter:sxcter|sxcter]], [[pipeline:cter:sxgui_cter|sxgui_cter]], [[pipeline:window:sxwindow|sxwindow]], [[pipeline:utilities:sxheader|sxheader]], [[pipeline:utilities:sxpipe_organize_micrographs|sxpipe organize_micrographs]], [[pipeline:movie:sxunblur|sxunblur]], and [[pipeline:movie:sxsummovie|sxsummovie]].+[[pipeline:cter:sxcter|sxcter]], [[pipeline:cter:sxgui_cter|sxgui_cter]], [[pipeline:window:sxwindow|sxwindow]], [[pipeline:window:sxrewindow|sxrewindow]], [[pipeline:utilities:sxheader|sxheader]], [[pipeline:utilities:sxpipe_organize_micrographs|sxpipe organize_micrographs]], [[pipeline:movie:sxunblur|sxunblur]], and [[pipeline:movie:sxsummovie|sxsummovie]].
  
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pipeline/utilities/sxrelion2sphire.txt · Last modified: 2019/04/02 10:57 by lusnig

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