User Tools

Site Tools


pipeline:utilities:e2display

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revision Previous revision
Next revision
Previous revision
pipeline:utilities:e2display [2018/02/16 10:11]
127.0.0.1 external edit
pipeline:utilities:e2display [2019/04/02 09:15]
lusnig
Line 1: Line 1:
 ~~NOTOC~~ ~~NOTOC~~
  
-====== e2display ======+===== e2display =====
 Display Data: Displays images, volumes, or 1D plots. Display Data: Displays images, volumes, or 1D plots.
  
 \\ \\
-====== Usage ======+===== Usage ===== 
 Usage in command line Usage in command line
  
Line 11: Line 12:
  
 \\ \\
-====== Typical usage ======+===== Typical usage ===== 
 e2display exists in non-MPI version. e2display exists in non-MPI version.
  
-The program can be executed in several different modes+The program can be executed in several different modes
 + 
 +\\ __1. Browser window with more flexible functionality:__
  
- Browser window with more flexible functionality: 
   e2display.py   e2display.py
  
- Only display one image: +\\ __2. Display only one image:__ 
-  display images+ 
 +  e2display.py input_image 
 + 
 +\\ __3. Display several images:__
  
-Display several images 
   e2display.py input_image1 input_image2 ...   e2display.py input_image1 input_image2 ...
  
 \\ \\
-====== Input ====== +===== Input ===== 
-=== Main Options ===+=== Main Parameters ===
   ; input_data_list : Input files: List of input images, volumes, plots. Wild cards (e.g *) can be used to select a list of files. Not recommended when the list is too large. (default none)   ; input_data_list : Input files: List of input images, volumes, plots. Wild cards (e.g *) can be used to select a list of files. Not recommended when the list is too large. (default none)
  
 \\ \\
-=== Advanced Options === +=== Advanced Parameters === 
-  ; classmx : Show particles from a class: Shows particles in one class defined in a classification matrix. The options requires <classmx>,<#>. (default none) +  ; %%--%%classmx : Show particles from a class: Shows particles in one class defined in a classification matrix. The options requires <classmx>,<#>. (default none) 
-  ; classes : Show class-averages associated with particles: Shows particles associated class averages. Requires <rawptcl>,<classmx>. (default none) +  ; %%--%%classes : Show class-averages associated with particles: Shows particles associated class averages. Requires <rawptcl>,<classmx>. (default none) 
-  ; pdb : Show PDB structure: (default none) +  ; %%--%%pdb : Show PDB structure: Show PDB structure. (default none) 
-  ; singleimage : Single image view: Displays a stack in a single image view. (default False) +  ; %%--%%singleimage : Single image view: Display a stack in a single image view. (default False) 
-  ; plot : Plot 2D: Data file(s) should be plotted rather than displayed in 2D. (default False) +  ; %%--%%plot : Plot 2D: Data file(s) should be plotted rather than displayed in 2D. (default False) 
-  ; plot3 : Plot 3D: Data file(s) should be plotted rather than displayed in 3D. (default False) +  ; %%--%%plot3 : Plot 3D: Data file(s) should be plotted rather than displayed in 3D. (default False) 
-  ; fullrange : Skip auto-contrast: Disables the auto contrast for the display of particles stacks and 2D images. (default False) +  ; %%--%%fullrange : Use full range of pixel values: Instead of default auto-contrast, use full range of pixel values for the display of particles stacks and 2D images. (default False) 
-  ; newwidget : Use new 3D widget: Highly recommended. (default False) +  ; %%--%%newwidget : Use new 3D widget: Highly recommended. (default False) 
-  ; ppid : Set PPID: Set PPID of the process. (default -2)  +  ; %%--%%ppid : Set PPID: Set PPID of the process. (default -2)  
-  ; verbose : Verbose: Accepted values 0-9. (default 0)+  ; %%--%%verbose : Verbose: Accepted values 0-9. (default 0)
  
 \\ \\
-====== Output ======+===== Output =====
  
 \\ \\
-====== Description ======+===== Description ===== 
 + 
 +\\ 
 +==== Method ==== 
 + 
 +\\ 
 +==== Reference ==== 
 + 
 +\\ 
 +==== Developer Notes ====
  
 \\ \\
Line 55: Line 69:
 \\ \\
 ==== Keywords ==== ==== Keywords ====
-category 1:: APPLICATIONS+Category 1:: APPLICATIONS
  
 \\ \\
 ==== Files ==== ==== Files ====
-e2display.py+programs/e2display.py
  
 \\ \\
Line 66: Line 80:
 \\ \\
 ==== Maturity ==== ==== Maturity ====
-No Bugs known so far.+Stable:: Works for most people, has been tested; test cases/examples available.
  
 \\ \\
 +==== Bugs ====
 +There are no known bugs so far.
 +
 +\\
 +
pipeline/utilities/e2display.txt · Last modified: 2019/04/02 09:15 by lusnig