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--- pipeline:utilities:e2display [2018/02/16 10:11]
127.0.0.1 external edit
+++ pipeline:utilities:e2display [2018/08/22 10:48]
fmerino
@@ Line 1: / Line 1: @@
 ~~NOTOC~~
-====== e2display ======
+===== e2display =====
 Display Data: Displays images, volumes, or 1D plots.
 \\
-====== Usage ======
+===== Usage =====
 Usage in command line
@@ Line 11: / Line 12: @@
 \\
-====== Typical usage ======
+===== Typical usage =====
 e2display exists in non-MPI version.
-The program can be executed in several different modes
+The program can be executed in several different modes:
+\\ __1. Browser window with more flexible functionality:__
- Browser window with more flexible functionality:
   e2display.py
- Only display one image:
+\\ __2. Display only one image:__
-  display images
+  e2display.py input_image
+\\ __3. Display several images:__
-Display several images
   e2display.py input_image1 input_image2 ...
 \\
-====== Input ======
+===== Input =====
-=== Main Options ===
+=== Main Parameters ===
   ; input_data_list : Input files: List of input images, volumes, plots. Wild cards (e.g *) can be used to select a list of files. Not recommended when the list is too large. (default none)
 \\
-=== Advanced Options ===
+=== Advanced Parameters ===
-  ; classmx : Show particles from a class: Shows particles in one class defined in a classification matrix. The options requires <classmx>,<#>. (default none)
+  ; %%--%%classmx : Show particles from a class: Shows particles in one class defined in a classification matrix. The options requires <classmx>,<#>. (default none)
-  ; classes : Show class-averages associated with particles: Shows particles associated class averages. Requires <rawptcl>,<classmx>. (default none)
+  ; %%--%%classes : Show class-averages associated with particles: Shows particles associated class averages. Requires <rawptcl>,<classmx>. (default none)
-  ; pdb : Show PDB structure: (default none)
+  ; %%--%%pdb : Show PDB structure: Show PDB structure. (default none)
-  ; singleimage : Single image view: Displays a stack in a single image view. (default False)
+  ; %%--%%singleimage : Single image view: Display a stack in a single image view. (default False)
-  ; plot : Plot 2D: Data file(s) should be plotted rather than displayed in 2D. (default False)
+  ; %%--%%plot : Plot 2D: Data file(s) should be plotted rather than displayed in 2D. (default False)
-  ; plot3 : Plot 3D: Data file(s) should be plotted rather than displayed in 3D. (default False)
+  ; %%--%%plot3 : Plot 3D: Data file(s) should be plotted rather than displayed in 3D. (default False)
-  ; fullrange : Skip auto-contrast: Disables the auto contrast for the display of particles stacks and 2D images. (default False)
+  ; %%--%%fullrange : Use full range of pixel values: Instead of default auto-contrast, use full range of pixel values for the display of particles stacks and 2D images. (default False)
-  ; newwidget : Use new 3D widget: Highly recommended. (default False)
+  ; %%--%%newwidget : Use new 3D widget: Highly recommended. (default False)
-  ; ppid : Set PPID: Set PPID of the process. (default -2)
+  ; %%--%%ppid : Set PPID: Set PPID of the process. (default -2)
-  ; verbose : Verbose: Accepted values 0-9. (default 0)
+  ; %%--%%verbose : Verbose: Accepted values 0-9. (default 0)
 \\
-====== Output ======
+===== Output =====
 \\
-====== Description ======
+===== Description =====
+\\
+==== Method ====
+\\
+==== Reference ====
+\\
+==== Developer Notes ====
 \\
@@ Line 55: / Line 69: @@
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 ==== Keywords ====
-category 1:: APPLICATIONS
+Category 1:: APPLICATIONS
 \\
 ==== Files ====
-e2display.py
+programs/e2display.py
 \\
@@ Line 66: / Line 80: @@
 \\
 ==== Maturity ====
-No Bugs known so far.
+Stable:: Works for most people, has been tested; test cases/examples available.
+\\
+==== Bugs ====
+There are no known bugs so far.
 \\

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