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--- pipeline:utilities:e2display [2016/11/29 19:50]
msaur created
+++ pipeline:utilities:e2display [2018/02/16 10:11]
127.0.0.1 external edit
@@ Line 2: / Line 2: @@
 ====== e2display ======
 Display Data: Displays images, volumes, or 1D plots.
-===== Usage =====
+\\
+====== Usage ======
-Usage in command line:
+Usage in command line
   e2display.py  input_data_list  --classmx=CLASSMX  --classes=CLASSES  --pdb=PDB  --singleimage  --plot  --plot3  --fullrange  --newwidget  --ppid=PPID  --verbose=n
-===== Typical usage =====
+\\
+====== Typical usage ======
+e2display exists in non-MPI version.
-  * Browser window with more flexible functionality
+The program can be executed in several different modes
+ Browser window with more flexible functionality:
   e2display.py
-  * Display images
+ Only display one image:
+  display images
+Display several images
   e2display.py input_image1 input_image2 ...
-e2display exists in non-MPI version.
+\\
+====== Input ======
+=== Main Options ===
+  ; input_data_list : Input files: List of input images, volumes, plots. Wild cards (e.g *) can be used to select a list of files. Not recommended when the list is too large. (default none)
-===== Input =====
+\\
+=== Advanced Options ===
+  ; classmx : Show particles from a class: Shows particles in one class defined in a classification matrix. The options requires <classmx>,<#>. (default none)
+  ; classes : Show class-averages associated with particles: Shows particles associated class averages. Requires <rawptcl>,<classmx>. (default none)
+  ; pdb : Show PDB structure: (default none)
+  ; singleimage : Single image view: Displays a stack in a single image view. (default False)
+  ; plot : Plot 2D: Data file(s) should be plotted rather than displayed in 2D. (default False)
+  ; plot3 : Plot 3D: Data file(s) should be plotted rather than displayed in 3D. (default False)
+  ; fullrange : Skip auto-contrast: Disables the auto contrast for the display of particles stacks and 2D images. (default False)
+  ; newwidget : Use new 3D widget: Highly recommended. (default False)
+  ; ppid : Set PPID: Set PPID of the process. (default -2)
+  ; verbose : Verbose: Accepted values 0-9. (default 0)
-  ;input_data_list : Input files - List of input images, volumes, plots. Wild cards (e.g *) can be used to select a list of files. Not recommended when the list is too large. (default none)
+\\
+====== Output ======
-  ;classmx : Show particles from a class - Shows particles in one class defined in a classification matrix. The options requires <classmx>,<#>. (default none)
+\\
-  ;classes : show class-averages associated with particles:Shows particles associated class averages. Requires <rawptcl>,<classmx>. (default none)
+====== Description ======
-  ;pdb : Show PDB structure: (default none)
-  ;singleimage : Single image view: Displays a stack in a single image view: (default False)
-  ;plot : Plot 2D: Data file(s) should be plotted rather than displayed in 2D. (default False)
-  ;plot3 : Plot 3D: Data file(s) should be plotted rather than displayed in 3D. (default False)
-  ;fullrange :  Skip auto-contrast: Disables the auto contrast for the display of particles stacks and 2D images. (default False)
-  ;newwidget : Use new 3D widget: Highly recommended. (default False)
-  ;ppid : Set PPID: Set PPID of the process. (default -2)
-  ;verbose : Verbose: Accepted values 0-9. (default 0)
-===== Description =====
+\\
-e2display is a flexible program to display a wide variety of data types. The options listed above are the ones used by SPHIRE. For a description of e2display as a standalone application, please visit its [[http://blake.bcm.edu/emanwiki/EMAN2/Programs/e2display | EMAN2 wiki page]]
 ==== Author / Maintainer ====
 EMAN2 Group
+\\
 ==== Keywords ====
 category 1:: APPLICATIONS
+\\
 ==== Files ====
 e2display.py
-==== Known Bugs ====
+\\
-None.
+==== See also ====
+\\
+==== Maturity ====
+No Bugs known so far.
+\\

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