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pipeline:utilities:e2display [2016/11/29 19:50] msaur created |
pipeline:utilities:e2display [2016/11/30 14:23] msaur |
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====== e2display ====== | ====== e2display ====== | ||
- | |||
Display Data: Displays images, volumes, or 1D plots. | Display Data: Displays images, volumes, or 1D plots. | ||
- | ===== Usage ===== | + | \\ |
- | + | ====== Usage ====== | |
- | Usage in command line: | + | Usage in command line |
e2display.py | e2display.py | ||
- | ===== Typical usage ===== | + | \\ |
+ | ====== Typical usage ====== | ||
+ | e2display exists in non-MPI version. | ||
- | * Browser window with more flexible functionality | + | The program can be executed in several different modes |
+ | | ||
e2display.py | e2display.py | ||
- | * Display | + | Only display one image: |
+ | display | ||
+ | Display several images | ||
e2display.py input_image1 input_image2 ... | e2display.py input_image1 input_image2 ... | ||
- | e2display exists in non-MPI version. | + | \\ |
+ | ====== Input ====== | ||
+ | === Main Options === | ||
+ | ; input_data_list : Input files: List of input images, volumes, plots. Wild cards (e.g *) can be used to select a list of files. Not recommended when the list is too large. (default none) | ||
- | ===== Input ===== | + | \\ |
+ | === Advanced Options | ||
+ | ; classmx : Show particles from a class: Shows particles in one class defined in a classification matrix. The options requires < | ||
+ | ; classes : Show class-averages associated with particles: Shows particles associated class averages. Requires < | ||
+ | ; pdb : Show PDB structure: (default none) | ||
+ | ; singleimage : Single image view: Displays a stack in a single image view. (default False) | ||
+ | ; plot : Plot 2D: Data file(s) should be plotted rather than displayed in 2D. (default False) | ||
+ | ; plot3 : Plot 3D: Data file(s) should be plotted rather than displayed in 3D. (default False) | ||
+ | ; fullrange : Skip auto-contrast: | ||
+ | ; newwidget : Use new 3D widget: Highly recommended. (default False) | ||
+ | ; ppid : Set PPID: Set PPID of the process. (default -2) | ||
+ | ; verbose : Verbose: Accepted values 0-9. (default 0) | ||
- | ; | + | \\ |
+ | ====== Output ====== | ||
- | ;classmx : Show particles from a class - Shows particles in one class defined in a classification matrix. The options requires < | + | \\ |
- | ; | + | ====== Description ====== |
- | ;pdb : Show PDB structure: (default none) | + | |
- | ; | + | |
- | ;plot : Plot 2D: Data file(s) should be plotted rather than displayed in 2D. (default False) | + | |
- | ;plot3 : Plot 3D: Data file(s) should be plotted rather than displayed in 3D. (default False) | + | |
- | ;fullrange : Skip auto-contrast: | + | |
- | ;newwidget : Use new 3D widget: Highly recommended. (default False) | + | |
- | ;ppid : Set PPID: Set PPID of the process. (default -2) | + | |
- | ;verbose : Verbose: Accepted values 0-9. (default 0) | + | |
- | ===== Description ===== | + | \\ |
- | + | ||
- | e2display is a flexible program to display a wide variety of data types. The options listed above are the ones used by SPHIRE. For a description of e2display as a standalone application, | + | |
==== Author / Maintainer ==== | ==== Author / Maintainer ==== | ||
EMAN2 Group | EMAN2 Group | ||
+ | \\ | ||
==== Keywords ==== | ==== Keywords ==== | ||
category 1:: APPLICATIONS | category 1:: APPLICATIONS | ||
+ | \\ | ||
==== Files ==== | ==== Files ==== | ||
e2display.py | e2display.py | ||
- | ==== Known Bugs ==== | + | \\ |
- | None. | + | ==== See also ==== |
+ | |||
+ | \\ | ||
+ | ==== Maturity ==== | ||
+ | No Bugs known so far. | ||
+ | \\ |