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pipeline:movie:sxunblur [2018/02/27 13:58] moriya |
pipeline:movie:sxunblur [2018/06/20 13:12] 127.0.0.1 external edit |
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=== Advanced Parameters === | === Advanced Parameters === | ||
; %%--%%save_frames : Save aligned movie frames: Save aligned movie frames. This option slows down the process. (default False) | ; %%--%%save_frames : Save aligned movie frames: Save aligned movie frames. This option slows down the process. (default False) | ||
- | ; %%--%%skip_dose_filter : Apply dose filter: Indicate if dose filter should be applied or not. With this option, voltage, | + | ; %%--%%skip_dose_filter : Apply dose filter: Indicate if dose filter should be applied or not. With this option, |
; %%--%%expert_mode : Use expert mode: Requires %%--%%initial_shift, | ; %%--%%expert_mode : Use expert mode: Requires %%--%%initial_shift, | ||
; %%--%%shift_initial : Minimum shift for initial search [A]: Effective only when %%--%%expert_mode option is used. (default 2.0) | ; %%--%%shift_initial : Minimum shift for initial search [A]: Effective only when %%--%%expert_mode option is used. (default 2.0) | ||
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The program automatically creates the following subdirectories in the specified output directory. | The program automatically creates the following subdirectories in the specified output directory. | ||
- | __Run without dose-filtering__: | + | \\ __Run without dose-filtering__: |
- | * Sum files will be written to the "corrsum" | + | * Sum files will be written to the '' |
- | * Log files will be written to the "logfiles" | + | * Log files will be written to the '' |
- | * Aligned frames will be written to the "corrsum" | + | * Aligned frames will be written to the '' |
- | * Shift files will be written to the "shift" | + | * Shift files will be written to the '' |
- | * FRC files will be written to the "frc" | + | * FRC files will be written to the '' |
- | __Run with dose-filtering (as without dose-filtering plus)__: | + | \\ __Run with dose-filtering (as without dose-filtering plus)__: |
- | * Dose filtered sum files will be written to the "corrsum_dose_filtered" | + | * Dose filtered sum files will be written to the '' |
- | * Log files will be written to the "logfiles" | + | * Log files will be written to the '' |
- | * Dose filtered aligned frames will be written to the "corrsum_dose_filtered" | + | * Dose filtered aligned frames will be written to the '' |
- | * Shift files will be written to the "shift" | + | * Shift files will be written to the '' |
- | * FRC files will be written to the "frc" | + | * FRC files will be written to the '' |
\\ | \\ |