This shows you the differences between two versions of the page.
Both sides previous revision Previous revision Next revision | Previous revision | ||
pipeline:meridien:sp_polishing [2021/03/16 10:29] aali [Output] |
pipeline:meridien:sp_polishing [2021/03/16 10:44] (current) aali [Usage] |
||
---|---|---|---|
Line 3: | Line 3: | ||
===== sp_polishing ===== | ===== sp_polishing ===== | ||
- | Bayesian : Apply Relion Bayesian Polishing on SPHIRE generated stack. | + | Bayesian |
===== Usage ===== | ===== Usage ===== | ||
Line 10: | Line 10: | ||
< | < | ||
- | sp_polishing.py post_refine_folder motioncorr_starfile output_folder training_params | + | |
- | –last_frame | + | |
- | –relion_mpirun_executable | + | |
</ | </ | ||
Line 58: | Line 56: | ||
===== Output ===== | ===== Output ===== | ||
- | shiny.star : Output star file for polishing particles. | + | ; shiny.star : Output star file for polishing particles. |
- | ; ; bdb: | + | ; bdb: |
- | BDB2STAR : Using sphire2relion tool , the bdb stack is converted to star file so that it can be used in relion. The star file is saved in BDB2STAR folder. | + | ; |
- | PostProcess : Since the input to the tool is Post refiner directory, the tool can automatically create the necessary file in PostProcess folder which is necessary to provide for polishing. | + | ; |
===== ===== | ===== ===== |