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pipeline:meridien:sp_higher_ord_abber [2021/03/16 10:58] aali |
pipeline:meridien:sp_higher_ord_abber [2021/03/22 16:30] aali |
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: The SPHIRE module provides a wrapper around the ctf refinement command. | : The SPHIRE module provides a wrapper around the ctf refinement command. | ||
- | : After running the ctf refinement routine, the wrapper automatically converts the star file and apply beam tilt correction on the star2BDB converted stack so that it can be used directly for further processing. (still in test phase). | + | : After running the ctf refinement routine, the wrapper automatically converts the star file and apply beam tilt correction on the star2BDB converted stack so that it can be used directly for further processing. (still in test phase). |
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===== Input ===== | ===== Input ===== | ||
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=== Main Parameters === | === Main Parameters === | ||
- | | + | ; ; post_refine_folder : : Input folder is the directory where the results of the post refiner are present and python routine automatically locates all the required files used for ctf refinement. (default required string) |
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=== Advanced Parameters === | === Advanced Parameters === | ||
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===== Output ===== | ===== Output ===== | ||
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- | | + | ; ; particles_ctf_refine.star |
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===== ===== | ===== ===== | ||
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- | module unload sphire (unload the module sphire) | + | module unload sphire (unload the module sphire) |
- | module load sphire/ | + | module load sphire/ |
module load relion | module load relion |