pipeline:meridien:sp_higher_ord_abber
Differences
This shows you the differences between two versions of the page.
| Both sides previous revision Previous revision | Next revision Both sides next revision | ||
|
pipeline:meridien:sp_higher_ord_abber [2021/03/16 10:56] aali |
pipeline:meridien:sp_higher_ord_abber [2021/03/16 10:58] aali |
||
|---|---|---|---|
| Line 35: | Line 35: | ||
| ; output_folder : Output folder : Output folder is the directory where all the results of the ctf refinement are saved. (default required string) | ; output_folder : Output folder : Output folder is the directory where all the results of the ctf refinement are saved. (default required string) | ||
| ; %%--%%estimate_magnification : Estimate (anisotropic) magnification | ; %%--%%estimate_magnification : Estimate (anisotropic) magnification | ||
| - | ; %%--%%estimate_beamtilt : Estimate beamtilt : Estimate beamtilt from the dataset. (default False) | + | ; %%--%%estimate_beamtilt : Estimate beamtilt : Estimate beamtilt from the dataset. (default False) |
| - | ; %%--%%estimate_trefoil : Also estimate trefoil : estimate 3-fold astigmatism per optics group .(default False) | + | ; %%--%%estimate_trefoil : Also estimate trefoil : estimate 3-fold astigmatism per optics group .(default False) |
| - | ; %%--%%estimate_order_aberation : Estimate the 4th order aberrations | + | ; %%--%%estimate_order_aberation : Estimate the 4th order aberrations |
| - | ; %%--%%perform_CTF_params_fit : Perform CTF parameter fitting : Perform CTF parameter fitting. (default False) | + | ; %%--%%perform_CTF_params_fit : Perform CTF parameter fitting : Perform CTF parameter fitting. (default False) |
| - | ; %%--%%fit_defocus_micrograph : Fit defocus based on micrographs : Fit defocus based on micrographs. (default False) | + | ; %%--%%fit_defocus_micrograph : Fit defocus based on micrographs : Fit defocus based on micrographs. (default False) |
| - | ; %%--%%fit_defocus_particle : Fit defocus based on particles : Fit defocus based on particles. (default False) | + | ; %%--%%fit_defocus_particle : Fit defocus based on particles : Fit defocus based on particles. (default False) |
| - | ; %%--%%fit_astigmatism_micrograph : Fit astigmatism based on micrographs : Fit astigmatism based on micrographs .(default False) | + | ; %%--%%fit_astigmatism_micrograph : Fit astigmatism based on micrographs : Fit astigmatism based on micrographs .(default False) |
| - | ; %%--%%fit_astigmatism_particle : Fit astigmatism based on particles : Fit astigmatism based on particles. (default False) | + | ; %%--%%fit_astigmatism_particle : Fit astigmatism based on particles : Fit astigmatism based on particles. (default False) |
| - | ; %%--%%fit_bfactor_micrograph : Fit bfactor based on micrographs : Fit bfactor based on micrographs. (default False) | + | ; %%--%%fit_bfactor_micrograph : Fit bfactor based on micrographs : Fit bfactor based on micrographs. (default False) |
| - | ; %%--%%fit_bfactor_particle : Fit bfactor based on particles : Fit bfactor based on particles. (default False) | + | ; %%--%%fit_bfactor_particle : Fit bfactor based on particles : Fit bfactor based on particles. (default False) |
| - | ; %%--%%fit_phase_shift_micrograph : Fit phase shift estimation for micrographs : Fit phase shift estimation for micrographs .(default False) | + | ; %%--%%fit_phase_shift_micrograph : Fit phase shift estimation for micrographs : Fit phase shift estimation for micrographs .(default False) |
| - | ; %%--%%fit_phase_shift_particle : Fit phase shift estimation for particles : Fit phase shift estimation for particles. (default False) | + | ; %%--%%fit_phase_shift_particle : Fit phase shift estimation for particles : Fit phase shift estimation for particles. (default False) |
| ; %%--%%min_res_fit : minimum resolution value for fitting (A) : minimum resolution value for fitting (default 30.0) | ; %%--%%min_res_fit : minimum resolution value for fitting (A) : minimum resolution value for fitting (default 30.0) | ||
| ; %%--%%submission_template : Submission template for MPI command. In case of running this tool on a cluster, always a submission template. The number of MPI processors and threads in the submission template should be the same as the one specified below in the MPI procs and threads value.(default none) | ; %%--%%submission_template : Submission template for MPI command. In case of running this tool on a cluster, always a submission template. The number of MPI processors and threads in the submission template should be the same as the one specified below in the MPI procs and threads value.(default none) | ||
pipeline/meridien/sp_higher_ord_abber.txt · Last modified: 2021/03/22 16:49 by aali
Page Tools
Except where otherwise noted, content on this wiki is licensed under the following license: GNU Free Documentation License 1.3
