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--- pipeline:meridien:sp_higher_ord_abber [2021/03/16 10:44]
aali created
+++ pipeline:meridien:sp_higher_ord_abber [2021/03/16 10:52]
aali
@@ Line 1: / Line 1: @@
 ~~NOTOC~~
-===== sp_polishing =====
+===== sp_higher_ord_abber =====
-Bayesian : Apply relion ctf refinement for higher order aberration correction.
+CTF Refinement : Apply relion ctf refinement for higher order aberration correction.
 ===== Usage =====
@@ Line 16: / Line 16: @@
 ===== Typical usage =====
-sp_polishing exists in both MPI and non-MPI versions (Running MPI version does not require –MPI flag).
+sp_higher_ord_abber exists in both MPI and non-MPI versions (Running MPI version does not require –MPI flag).
-The purpose of sp_polishing.py is to :
+The purpose of sp_higher_ord_abber.py is to :
 <code>
-: Apply Relion Bayesian Polishing using the stack generated from Meridien.
+: Apply CTF refinement to estimation different parameters such beam tilt, phase shift, magnification etc.
-: The SPHIRE module provides a wrapper around the polishing command for training as well
+: The SPHIRE module provides a wrapper around the ctf refinement command.
-  motion estimation
-: After running the polishing routine, the wrapper automatically converts the shiny.star in
+: After running the ctf refinement routine, the wrapper automatically converts the star file and apply beam tilt correction on the star2BDB converted stack so that it can be used directly for further processing. (still in test phase).
-  the Output folder to a BDB stack and saves it in the folder name of Polish Stack.
 </code>

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