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pipeline:localres:sxfilterlocal [2018/06/20 13:12] 127.0.0.1 external edit |
pipeline:localres:sxfilterlocal [2019/04/02 10:11] lusnig |
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~~NOTOC~~ | ~~NOTOC~~ | ||
- | ===== sxfilterlocal | + | ===== sp_filterlocal |
- | 3D Local Filter: Locally filter maps according to the local resolution determined by [[pipeline: | + | 3D Local Filter: Locally filter maps according to the local resolution determined by [[pipeline: |
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Usage in command line | Usage in command line | ||
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===== Typical usage ===== | ===== Typical usage ===== | ||
- | sxlocres | + | sp_locres |
- | mpirun -np 32 sxfilterlocal.py refinementdir/ | + | mpirun -np 32 sp_filterlocal.py refinementdir/ |
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=== Main Parameters === | === Main Parameters === | ||
; input_volume : Input volume: Path to input volume file containing the 3D density map. (default required string) | ; input_volume : Input volume: Path to input volume file containing the 3D density map. (default required string) | ||
- | ; locres_volume : Local resolution file: Path to volume file containing the local resolution estimate produced by [[pipeline: | + | ; locres_volume : Local resolution file: Path to volume file containing the local resolution estimate produced by [[pipeline: |
; maskfile : 3D mask: Defines the region where the local filtering should be applied. (default none) | ; maskfile : 3D mask: Defines the region where the local filtering should be applied. (default none) | ||
; outputfile : Output volume: Path to output volume file contained locally-filtered 3D density map. (default required string) | ; outputfile : Output volume: Path to output volume file contained locally-filtered 3D density map. (default required string) | ||
- | ; %%--%%radius : Mask radius [Pixels]: In case no mask is provided, a hard sphere | + | ; %%--%%radius : Mask radius [Pixels]: In case no mask is provided, a hard sphere will be used. Use radius of the particle. (default -1) |
; %%--%%falloff : Low-pass filter fall-off [1/Pixels]: The program uses a tangent low-pass filter. Specify with absolute frequency. (default 0.1) | ; %%--%%falloff : Low-pass filter fall-off [1/Pixels]: The program uses a tangent low-pass filter. Specify with absolute frequency. (default 0.1) | ||
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==== Files ==== | ==== Files ==== | ||
- | sparx/bin/sxfilterlocal.py | + | sparx/bin/sp_filterlocal.py |
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==== See also ==== | ==== See also ==== | ||
- | [[pipeline: | + | [[pipeline: |
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