User Tools

Site Tools

pipeline:cter:sxgui_cter

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revision Previous revision
Next revision 		Previous revision
Next revision Both sides next revision
pipeline:cter:sxgui_cter [2018/08/22 10:53]
fmerino 		pipeline:cter:sxgui_cter [2019/06/07 11:47]
shaikh
Line 1: Line 1:
 ~~NOTOC~~ ~~NOTOC~~
  
-===== sxgui_cter ===== +===== sp_gui_cter ===== 
-CTF Assessment: GUI tool to assess and sort micrographs according to their CTF parameters estimated by [[pipeline:cter:sxcter|sxcter]].+CTF Assessment: GUI tool to assess and sort micrographs according to their CTF parameters estimated by [[pipeline:cter:sp_cter|sp_cter]].
  
 \\ \\
Line 9: Line 9:
 Usage in command line Usage in command line
  
-  sxgui_cter.py  cter_ctf_file +  sp_gui_cter.py  cter_ctf_file 
  
 \\ \\
 ===== Typical usage ===== ===== Typical usage =====
  
-sxgui_cter GUI tool can be run as a stand-alone program or run from the SPHIRE GUI.+sp_gui_cter GUI tool can be run as a stand-alone program or run from the SPHIRE GUI. 
 + 
 +  sp_gui_cter.py  outdir_cter/partres.txt 
 + 
 +Upon startup, the following windows will appear: 
 + 
 +  ; Control panel : Main window controlling display of the other windows, and displaying data from partres.txt 
 +  ; Rotational average plot, zoomed : 1D profiles of the power spectra, experimental and calculated 
 +  ; Histogram : Plot of number of micrographs as a function of a selected parameter (see below) 
 +  ; Sort plot : Plot of a selected parameter (see below) for each micrograph
  
-  sxgui_cter.py  outdir_cter/partres.txt 
  
 \\ \\
 ===== Input ===== ===== Input =====
 === Main Parameters === === Main Parameters ===
-  ; cter_ctf_file : File containing CTF parameters: This file is produced by sxcter and normally called partres.txt. (default none)+  ; cter_ctf_file : File containing CTF parameters: This file is produced by sp_cter and normally called partres.txt. (default none)
  
 \\ \\
Line 41: Line 49:
 ==== Developer Notes ==== ==== Developer Notes ====
 === 2017/12/07 Toshio Moriya === === 2017/12/07 Toshio Moriya ===
-The format of ''partres.txt'' is changed. The old format is also supported for now, but will be removed in near future. Please also refer [[pipeline:cter:sxcter|sxcter]].+The format of ''partres.txt'' is changed. The old format is also supported for now, but will be removed in near future. Please also refer [[pipeline:cter:sp_cter|sp_cter]].
  
 \\ \\
Line 53: Line 61:
 \\ \\
 ==== Files ==== ==== Files ====
-sparx/bin/sxgui_cter.py+sparx/bin/sp_gui_cter.py
  
 \\ \\
 ==== See also ==== ==== See also ====
-[[pipeline:cter:sxcter|sxcter]], [[pipeline:window:sxwindow|sxwindow]]+[[pipeline:cter:sxcter|sp_cter]], [[pipeline:window:sxwindow|sp_window]]
  
 \\ \\
pipeline/cter/sxgui_cter.txt · Last modified: 2019/09/12 18:49 by shaikh

Page Tools

Except where otherwise noted, content on this wiki is licensed under the following license: GNU Free Documentation License 1.3
GNU Free Documentation License 1.3 Donate Powered by PHP Valid HTML5 Valid CSS Driven by DokuWiki