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--- pipeline:cter:sxcter [2018/02/20 12:54]
moriya
+++ pipeline:cter:sxcter [2018/02/21 14:29]
moriya
@@ Line 9: / Line 9: @@
 Usage in command line
-  sxcter.py  input_image_path  output_directory  --selection_list=selection_list  --wn=CTF_WINDOW_SIZE --apix=PIXEL_SIZE  --Cs=CS  --voltage=VOLTAGE  --ac=AMP_CONTRAST  --f_start=FREA_START  --f_stop=FREQ_STOP  --kboot=KBOOT  --overlap_x=OVERLAP_X  --overlap_y=OVERLAP_Y  --edge_x=EDGE_X  --edge_y=EDGE_Y  --check_consistency  --stack_mode  --debug_mode  --vpp  --defocus_min=DEFOCUS_MIN  --defocus_max=DEFOCUS_MAX  --defocus_step=DEFOCUS_STEP  --phase_min=PHASE_MIN    --phase_max=PHASE_MAX  --phase_step==PHASE_STEP  --pap
+  sxcter.py  input_image_path  output_directory  --selection_list=SELECTION_TEXT_FILE  --wn=CTF_WINDOW_SIZE --apix=PIXEL_SIZE  --Cs=CS  --voltage=VOLTAGE  --ac=AMP_CONTRAST  --f_start=FREA_START  --f_stop=FREQ_STOP  --kboot=KBOOT  --overlap_x=OVERLAP_X  --overlap_y=OVERLAP_Y  --edge_x=EDGE_X  --edge_y=EDGE_Y  --check_consistency  --stack_mode  --debug_mode  --vpp  --defocus_min=DEFOCUS_MIN  --defocus_max=DEFOCUS_MAX  --defocus_step=DEFOCUS_STEP  --phase_min=PHASE_MIN    --phase_max=PHASE_MAX  --phase_step==PHASE_STEP  --pap
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 === Attachments ===
-S ribosome determined using 35,198 projection images collected with a 300 kV Tecnai Polara (FEI) equipped with the K2 Summit DED camera.  Resolution of the the large subunit is 3.84 Å (using FSC with 0.5 cut-off criterion). [[attachment:80SK2.mrc.gz]] ('''Warning''': file size is 21MB.)
+S ribosome determined using 35,198 projection images collected with a 300 kV Tecnai Polara (FEI) equipped with the K2 Summit DED camera.  Resolution of the the large subunit is 3.84 Å (using FSC with 0.5 cut-off criterion). [[attachment:80SK2.mrc.gz]] (''Warning'': file size is 21MB.)
 \\

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