Differences

This shows you the differences between two versions of the page.

--- howto:submissions [2018/06/20 13:12]
127.0.0.1 external edit
+++ howto:submissions [2019/04/16 16:24]
mstabrin
@@ Line 15: / Line 15: @@
 This will create a file called qsub_sxisac_test.sh with the correct setup and submit it to the cluster.
+\\
+This variables can be set in the environment to adjust the default values for the job submission text fields.
+|| **Variable** || **Description** ||
+||SPHIRE_MPI_COMMAND_LINE_TEMPLATE || Command line template||
+||SPHIRE_SUBMISSION_COMMAND || Submission command||
+||SPHIRE_SUBMISSION_SCRIPT_TEMPLATE || Submission script template||
+||SPHIRE_SUBMISSION_SCRIPT_TEMPLATE_FOLDER || Folder containing different submission script templates||
 \\
 ===== Example Scripts =====
@@ Line 66: / Line 74: @@
 * 23 = 184
 </code>
+==== Slurm ====
+Below you can find one example of the kind of submission templates that would be used for Slurm queueing system.
+On our system, we had issues with "the mpirun --map-by node" option, so we recommend to not use for now.
+  #!/bin/zsh
+  #SBATCH --partition all
+  #SBATCH --time 7-00:00
+  #SBATCH --ntasks XXX_SXMPI_NPROC_XXX
+  #SBATCH --output XXX_SXMPI_JOB_NAME_XXX.log
+  #SBATCH --job-name XXX_SXMPI_JOB_NAME_XXX
+  module load sphire
+  mpirun -n XXX_SXMPI_NPROC_XXX XXX_SXCMD_LINE_XXX