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gpu_isac [2020/05/29 17:43] fschoenfeld |
gpu_isac [2020/05/29 18:44] fschoenfeld |
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</ | </ | ||
- | ===== Installation ===== | + | ===== Download & Installation ===== |
<note important> | <note important> | ||
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//**Note:** To confirm a working version of SPHIRE 1.3 (or later), use //'' | //**Note:** To confirm a working version of SPHIRE 1.3 (or later), use //'' | ||
</ | </ | ||
+ | |||
+ | === Download === | ||
* The GPU ISAC beta version is currently distributed as a .tar file that can be found {{: | * The GPU ISAC beta version is currently distributed as a .tar file that can be found {{: | ||
+ | * A printout of the installation notes below can be found {{: | ||
+ | |||
+ | === Installation === | ||
- **Extract the archive** to your chosen GPU ISAC installation folder. | - **Extract the archive** to your chosen GPU ISAC installation folder. | ||
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An example call to use GPU ISAC looks as follows: | An example call to use GPU ISAC looks as follows: | ||
- | **'' | + | < |
- | --target_radius=29 --target_nx=76 --img_per_grp=100 --minimum_grp_size=60 -thld_err=0.7 | + | mpirun -np 6 / |
+ | </ | ||
+ | |||
+ | More readable: | ||
+ | |||
+ | < | ||
+ | mpirun -np 6 / | ||
+ | bdb: | ||
+ | --CTF | ||
+ | -–radius=160 | ||
+ | --target_radius=29 | ||
+ | --target_nx=76 | ||
+ | --img_per_grp=100 | ||
+ | --minimum_grp_size=60 | ||
+ | --thld_err=0.7 | ||
--center_method=0 | --center_method=0 | ||
- | --gpu_devices=0, | + | --gpu_devices=0, |
+ | </ | ||
**[ ! ] - Mandatory** parameters in the GPU ISAC call: | **[ ! ] - Mandatory** parameters in the GPU ISAC call: | ||
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* Replace '' | * Replace '' | ||
* Replace '' | * Replace '' | ||
- | * Adjust the number in '' | + | * Adjust the number in '' |
**[?] - Optional** parameters in the GPU ISAC call: | **[?] - Optional** parameters in the GPU ISAC call: | ||
* In '' | * In '' | ||
- | * In '' | + | * Using '' |
- | * You can also use '' | + | * You can also use '' |
- | * Similarly, you can also use '' | + | * Similarly, you can also use '' |
< | < |