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--- downloads:sphire_1_2 [2019/04/26 16:11]
mstabrin [Test the installation]
+++ downloads:sphire_1_2 [2019/06/25 12:37]
shaikh [Tutorial]
@@ Line 5: / Line 5: @@
 Main features added in this release:
-  * Restacking program: Functionality includes the easy re-extraction and re-centering of particles based on the shift information obtained from 3D refinement, as well as straightforward exchange of CTF information.
+   * Will follow soon
-  * Moon eliminator: This new tool replaces the previous resample/clipping step after RVIPER. Among other functions, it automatically filters the initial volume, eliminates disconnected densities, and allows for the centering to be adjusted.
 ===== Tutorial =====
 We are currently updating the tutorial to comply with the most recent version. In the meantime, links to the SPHIRE 1.0 tutorial and data sets are included below:
-[[:downloads:sphire_1_0|SPHIRE 1.0]]
+[[ftp://ftp.gwdg.de/pub/misc/sphire/sphire_1_2_tutorial/sphire_1_2.pdf|SPHIRE 1.2]]
 /*
@@ Line 210: / Line 209: @@
 ==== Reinstall Pydusa (Required) ====
-=== Preparations ===
+=== Prerequisits ===
-The current procedure is broken, therefore some files need to be replaced.
+. Install pytz
-This fix also allows a more easy linkage to an already existing OpenMPI version on the system.
+<code>python -m pip install pytz</code>
-. Download the necessary files: ftp://ftp.gwdg.de/pub/misc/sphire/sphire_1_2/sphire_util_pydusa_fix_20190205.tar
-. Replace the utils folder with the downloaded one.
-. Continue with one of the two following steps [[downloads:sphire_1_2#existing_openmpi_installation| existing OpenMPI installation]] or [[downloads:sphire_1_2#reinstall_openmpi_might_be_necessary| Reinstall OpenMPI]]
 === Reinstall OpenMPI (Might be necessary) ===
@@ Line 327: / Line 320: @@
   * On Mac Retina displays, problems with Qt: button size is larger, etc.

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