This shows you the differences between two versions of the page.
Both sides previous revision Previous revision Next revision | Previous revision Next revision Both sides next revision | ||
downloads:cryolo_1 [2019/07/11 11:27] twagner [General PhosaurusNet models] |
downloads:cryolo_1 [2019/07/29 15:58] twagner [Known issues] |
||
---|---|---|---|
Line 34: | Line 34: | ||
====crYOLO==== | ====crYOLO==== | ||
- | Version: 1.4.0 | + | Version: 1.4.1 |
- | Uploaded: | + | Uploaded: |
- | [[ftp://ftp.gwdg.de/pub/misc/sphire/ | + | [[https://pypi.org/project/cryolo/#files|DOWNLOAD]] |
Please see [[downloads: | Please see [[downloads: | ||
Line 44: | Line 44: | ||
====crYOLO boxmanager==== | ====crYOLO boxmanager==== | ||
- | Version: 1.2.3 | + | Version: 1.2.6 |
- | Uploaded: | + | Uploaded: |
- | [[ftp://ftp.gwdg.de/pub/misc/sphire/ | + | [[https://pypi.org/project/cryoloBM/#files|DOWNLOAD]] |
[{{ : | [{{ : | ||
Line 97: | Line 97: | ||
* Issue 0: Training on multiple GPUs sometimes lead to worse performance (higher loss). We currently recommend to train on single gpus. | * Issue 0: Training on multiple GPUs sometimes lead to worse performance (higher loss). We currently recommend to train on single gpus. | ||
* Issue 17: On the fly filtering (%%--%%otf) is slower than using it not, as the filtering is not parallelized in this case. | * Issue 17: On the fly filtering (%%--%%otf) is slower than using it not, as the filtering is not parallelized in this case. | ||
+ | |||
+ | |||
<hidden Closed issues> | <hidden Closed issues> | ||
* < | * < | ||
Line 119: | Line 121: | ||
* < | * < | ||
* < | * < | ||
+ | * < | ||
+ | * < | ||
</ | </ | ||
Line 145: | Line 149: | ||
After that, create a new virtual environment: | After that, create a new virtual environment: | ||
< | < | ||
- | conda create -n cryolo -c anaconda python=3.6 pyqt=5 cudnn=7.1.2 cython | + | conda create -n cryolo -c anaconda python=3.6 pyqt=5 cudnn=7.1.2 |
</ | </ | ||
Line 151: | Line 155: | ||
< | < | ||
source activate cryolo | source activate cryolo | ||
- | </ | ||
- | |||
- | Install fast numpy from conda: | ||
- | < | ||
- | conda install numpy==1.15.4 | ||
</ | </ | ||
In case you run **crYOLO on a GPU** run: | In case you run **crYOLO on a GPU** run: | ||
< | < | ||
- | pip install cryolo-X.Y.Z.tar.gz[gpu] | + | pip install |
</ | </ | ||
But if you want to run **crYOLO on a CPU** run: | But if you want to run **crYOLO on a CPU** run: | ||
< | < | ||
- | pip install cryolo-X.Y.Z.tar.gz[cpu] | + | pip install |
</ | </ | ||
- | Finally | + | < |
- | < | + | During the installtion of crYOLO |
- | pip install cryoloBM-X.Y.Z.tar.gz | + | '' |
- | </code> | + | However, you can ignore it. It is actually also working with numpy==1.14.5 |
+ | </note> | ||
**That' | **That' | ||
Line 194: | Line 194: | ||
====crYOLO==== | ====crYOLO==== | ||
+ | |||
+ | **crYOLO 1.4.1:** | ||
+ | * Downgrade the dependencies to tensorflow 1.10.1 and numpy 1.14.5 as some users reported long initialization times. (Thanks to Shaun Rawson) | ||
+ | * The initialization weights are not longer shipped with the package and downloaded on-the-fly (because they are big and pypi does not allow such big packages) | ||
+ | * crYOLO is installed through pypi | ||
+ | * crYOLO box manager is installed through pypi and automatically shipped with the crYOLO package | ||
+ | * Fix fine-tune mode (Thanks to Antoine Koehl) | ||
+ | * Fixed normalization function for YOLO backend (Thanks to Wolfgang Lugmayr) | ||
+ | |||
+ | <hidden **Old crYOLO change logs**> | ||
**crYOLO 1.4.0:** | **crYOLO 1.4.0:** | ||
Line 201: | Line 211: | ||
* Update numpy from 1.14.5 to 1.15.4 to make crYOLO compatible with JANNI | * Update numpy from 1.14.5 to 1.15.4 to make crYOLO compatible with JANNI | ||
- | <hidden **Old crYOLO change logs**> | ||
**crYOLO 1.3.6:** | **crYOLO 1.3.6:** | ||
* Changed filament search radius factor from 0.8 to 1.41 (this fixed issue 21) | * Changed filament search radius factor from 0.8 to 1.41 (this fixed issue 21) | ||
Line 340: | Line 349: | ||
</ | </ | ||
====crYOLO Boxmanager==== | ====crYOLO Boxmanager==== | ||
- | **crYOLO Boxmanager Version 1.2.3:** | + | **crYOLO Boxmanager Version 1.2.6:** |
* Make it compatible with current new environment | * Make it compatible with current new environment | ||
<hidden **Old crYOLO Boxmanager change logs**> | <hidden **Old crYOLO Boxmanager change logs**> | ||
+ | |||
+ | **crYOLO Boxmanager Version 1.2.3:** | ||
+ | * Make it compatible with current new environment | ||
+ | |||
**crYOLO Boxmanager Version 1.2.2:** | **crYOLO Boxmanager Version 1.2.2:** | ||
* Makes sure that the correct version of MatplotLib is used. | * Makes sure that the correct version of MatplotLib is used. |