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downloads:cryolo_1 [2019/06/24 09:18] twagner [Paper] |
downloads:cryolo_1 [2019/07/09 19:58] twagner [Run it on the CPU] |
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Uploaded: | Uploaded: | ||
- | [[ftp:// | + | [[ftp:// |
- | [[ftp://ftp.gwdg.de/ | + | Please see install instruction how to get it running on the CPU. |
====crYOLO boxmanager==== | ====crYOLO boxmanager==== | ||
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=== For cryo images === | === For cryo images === | ||
- | Number of datasets: 38 real, 10 simulated, 10 particle free datasets on various grids with contaminations | + | Number of datasets: 38 real, 10 simulated, 10 particle free datasets on various grids with contamination |
Uploaded: 17. May 2019 | Uploaded: 17. May 2019 | ||
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After that, create a new virtual environment: | After that, create a new virtual environment: | ||
< | < | ||
- | conda create -n cryolo -c anaconda python=3.6 pyqt=5 cudnn=7.1.2 | + | conda create -n cryolo -c anaconda python=3.6 pyqt=5 cudnn=7.1.2 |
</ | </ | ||
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Install crYOLO: | Install crYOLO: | ||
< | < | ||
- | conda install numpy==1.14.5 | + | conda install numpy==1.15.4 |
- | pip install cryolo-X.Y.Z.tar.gz | + | #IN CASE YOU WANT TO INSTALL THE GPU VERSION: |
+ | pip install cryolo-X.Y.Z.tar.gz[gpu] | ||
+ | #IN CASE YOU WANT TO INSTALL THE CPU VERSION: | ||
+ | pip install cryolo-X.Y.Z.tar.gz[cpu] | ||
pip install cryoloBM-X.Y.Z.tar.gz | pip install cryoloBM-X.Y.Z.tar.gz | ||
</ | </ | ||
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===== Run it on the CPU ==== | ===== Run it on the CPU ==== | ||
- | There is also a way to run crYOLO on CPU. To use it, just install | + | There is also a way to run crYOLO on CPU. To use it, just follow |
Picking with crYOLO is also quite fast on the CPU. On my local machine (Intel i9) it takes roughly 1 second per micrograph and on our low-performance notebooks (Intel i3) 4 seconds. | Picking with crYOLO is also quite fast on the CPU. On my local machine (Intel i9) it takes roughly 1 second per micrograph and on our low-performance notebooks (Intel i3) 4 seconds. |