This shows you the differences between two versions of the page.
Both sides previous revision Previous revision Next revision | Previous revision Next revision Both sides next revision | ||
downloads:cryolo_1 [2019/05/17 08:22] twagner [crYOLO] |
downloads:cryolo_1 [2019/07/09 18:32] shaikh [General PhosaurusNet models] |
||
---|---|---|---|
Line 12: | Line 12: | ||
You can find more technical details in our paper: | You can find more technical details in our paper: | ||
+ | Nature Communications Biology: | ||
+ | [[https:// | ||
+ | |||
+ | Preprint: | ||
[[https:// | [[https:// | ||
Line 52: | Line 56: | ||
=== For cryo images === | === For cryo images === | ||
- | Number of datasets: 38 real, 10 simulated, 10 particle free datasets on various grids with contaminations | + | Number of datasets: 38 real, 10 simulated, 10 particle free datasets on various grids with contamination |
Uploaded: 17. May 2019 | Uploaded: 17. May 2019 | ||
Line 98: | Line 102: | ||
* < | * < | ||
* < | * < | ||
- | * Issue 21: The search range for filament tracing is too low for many datasets. To check if you are affected: Use your trained model and pick without the filament options. Check if your filaments a nicely picked (many consecutive boxes on a filament). In the next version, the search range will be increased and added as an optional parameter. | + | * <del>Issue 21: The search range for filament tracing is too low for many datasets. To check if you are affected: Use your trained model and pick without the filament options. Check if your filaments a nicely picked (many consecutive boxes on a filament). In the next version, the search range will be increased and added as an optional parameter.</ |
- | * Issue 22: If absolute paths are used in the field " | + | * <del>Issue 22: If absolute paths are used in the field " |
Line 164: | Line 168: | ||
**crYOLO 1.3.6:** | **crYOLO 1.3.6:** | ||
* Changed filament search radius factor from 0.8 to 1.41 (this fixed issue 21) | * Changed filament search radius factor from 0.8 to 1.41 (this fixed issue 21) | ||
- | * Add search radius factor as parameter (-sr) during prediction in filament mode | + | * Add search radius factor as [[pipeline: |
* Improved error message in case of corrupted config file | * Improved error message in case of corrupted config file | ||
* Fixed issue 22: If absolute paths are used in the field “train_image” in your configuration file, filtering is skipped. | * Fixed issue 22: If absolute paths are used in the field “train_image” in your configuration file, filtering is skipped. |