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cryolo_release_note_110 [2018/08/23 11:44] twagner |
cryolo_release_note_110 [2018/08/24 08:19] twagner [Training] |
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* Experimental support of periodic restarts during training (with --warm_restarts) | * Experimental support of periodic restarts during training (with --warm_restarts) | ||
- | ==== Changes crYOLO Boxmanager ==== | + | ===== Changes crYOLO Boxmanager |
* Support of visualization of EMAN2 helical coordinates (particle coordinates) | * Support of visualization of EMAN2 helical coordinates (particle coordinates) | ||
* New boxes could be loaded with a new color while keeping the old. | * New boxes could be loaded with a new color while keeping the old. | ||
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===== Picking filaments - Using a model trained for your data ===== | ===== Picking filaments - Using a model trained for your data ===== | ||
+ | Since version 1.1.0 crYOLO supports picking filaments. | ||
==== Data preparation ==== | ==== Data preparation ==== | ||
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==== Training ==== | ==== Training ==== | ||
- | In principle, there is not much difference in training crYOLO for filament picking and particle picking. However, in our experience the warm-up phase and training need a little bit more time: | + | In principle, there is not much difference in training crYOLO for filament picking and particle picking. For project with roughly 20 filaments per image we successfully trained on 40 images (=> 800 filaments). However, in our experience the warm-up phase and training need a little bit more time: |
**1. Warm up your network** | **1. Warm up your network** | ||
< | < | ||
- | cryolo_train.py -c config.json -w 10 -g 0 | + | cryolo_train.py -c config.json -w 10 |
</ | </ | ||
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< | < | ||
- | cryolo_train.py -c config.json -w 0 -g 0 -e 10 | + | cryolo_train.py -c config.json -w 0 -e 10 |
</ | </ | ||
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You can use the boxmanager as described [[pipeline: | You can use the boxmanager as described [[pipeline: | ||
- | ===== New evaluation tool ===== | + | ===== Evaluate your results |
The new evaluation tool allows you, based on your validation data, to get statistics about your training. | The new evaluation tool allows you, based on your validation data, to get statistics about your training. |