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cryolo_release_note_110 [2018/08/23 11:40] shaikh |
cryolo_release_note_110 [2018/08/23 13:10] twagner [Training] |
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====== crYOLO 1.1.0 release notes ====== | ====== crYOLO 1.1.0 release notes ====== | ||
- | ===== Changes ===== | + | ===== Changes |
* crYOLO now supports filaments (more here) | * crYOLO now supports filaments (more here) | ||
* New evaluation tool (more here) | * New evaluation tool (more here) | ||
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* Extended data augmentation: | * Extended data augmentation: | ||
* Experimental support of periodic restarts during training (with --warm_restarts) | * Experimental support of periodic restarts during training (with --warm_restarts) | ||
+ | |||
+ | ===== Changes crYOLO Boxmanager ===== | ||
+ | * Support of visualization of EMAN2 helical coordinates (particle coordinates) | ||
+ | * New boxes could be loaded with a new color while keeping the old. | ||
+ | * Several bug fixes | ||
+ | |||
===== Picking filaments - Using a model trained for your data ===== | ===== Picking filaments - Using a model trained for your data ===== | ||
+ | Since version 1.1.0 crYOLO supports picking filaments. | ||
==== Data preparation ==== | ==== Data preparation ==== | ||
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==== Training ==== | ==== Training ==== | ||
- | In principle, there is not much difference in training crYOLO for filament picking and particle picking. However, in our experience the warm-up phase and training need a little bit more time: | + | In principle, there is not much difference in training crYOLO for filament picking and particle picking. For project with roughly 20 filaments per image we successfully trained on 40 images (=> 800 filaments). However, in our experience the warm-up phase and training need a little bit more time: |
**1. Warm up your network** | **1. Warm up your network** | ||
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You can use the boxmanager as described [[pipeline: | You can use the boxmanager as described [[pipeline: | ||
- | ===== New evaluation tool ===== | + | ===== Evaluation your results |
The new evaluation tool allows you, based on your validation data, to get statistics about your training. | The new evaluation tool allows you, based on your validation data, to get statistics about your training. |